Core Faculty

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Job Title	Assistant Professor
Name	Yi-Lung Chen
Office No.	(02)3366-3362
Lab TEL	02-3366-4814
Email
Research Expertise	Microbiomics, Microbial Diversity, Microbial Ecology
Teaching Field	Microbial Physiology, Bioinformatics, Microbiomics
研究室名稱(位置)	Microbial Diversity Laboratory (Agricultural Chemistry Building 1, Room R223)

Diploma
Personal Journal

Country	School Name	Department	Degree
Taiwan	National Taiwan Normal University and Academia Sinica	Taiwan International Graduate Program in Biodiversity.	Ph.D.
(Paris VI) (European Union)	University of Bremen, and Pierre and Marie Curie University	Erasmus Mundus Program in Marine Biodiversity and Conservation.	M.S.
Taiwan	National Taiwan University	Institute of Oceanography.	M.S.
Taiwan	National Chung Hsing University	Department of Botany.	B.S.

Year	Paper Title
2023	Z Liu, R Cai, YL Chen, X Zhuo, C He, Q Zheng, D He, Q Shi, N Jiao, Direct Production of Bio-Recalcitrant Carboxyl-Rich Alicyclic Molecules Evidenced in a Bacterium-Induced Steroid Degradation Experiment, Microbiology Spectrum 11 (2), e04693-22, 2023
2023	TH Hsiao, PH Chen, PH Wang, GJ Brandon-Mong, CW Li, M Horinouchi, ..., Harnessing microbial phylum-specific molecular markers for assessment of environmental estrogen degradation, Science of the Total Environment 896, 165152, 2023
2023	TH Hsiao, CH Chou, YL Chen, PH Wang, GJ Brandon-Mong, TH Lee, ..., Circulating androgen regulation by androgen-catabolizing gut bacteria in male mouse gut, Gut microbes 15 (1), 2183685, 2023
2022	C Ying, YS Siao, WJ Chen, YT Chen, SL Chen, YL Chen, JT Hsu, Host species and habitats shape the bacterial community of gut microbiota of three non-human primates: Siamangs, white-handed gibbons, and Bornean orangutans, Frontiers in Microbiology 13, 920190, 2022
2022	W Yan, X Feng, TH Lin, X Huang, L Xie, S Wei, K Zhou, YL Chen, W Luo, ..., Diverse Subclade Differentiation Attributed to the Ubiquity of Prochlorococcus High-Light-Adapted Clade II, Mbio 13 (2), e03027-21, 2022
2022	TH Hsiao, TH Lee, MR Chuang, PH Wang, M Meng, M Horinouchi, ..., Identification of essential β‐oxidation genes and corresponding metabolites for oestrogen degradation by actinobacteria, Microbial Biotechnology 15 (3), 949-966, 2022
2022	PH Wang, YL Chen, TY Wu, YW Wu, TY Wang, CJ Shih, STS Wei, YL Lai, ..., Omics and mechanistic insights into di-(2-ethylhexyl) phthalate degradation in the O2-fluctuating estuarine sediments, Chemosphere 299, 134406, 2022
2021	J Lian, X Zheng, X Zhuo, YL Chen, C He, Q Zheng, TH Lin, J Sun, W Guo, .., Microbial transformation of distinct exogenous substrates into analogous composition of recalcitrant dissolved organic matter, Environmental Microbiology 23 (5), 2389-2403, 2021
2021	X Feng, W Yan, A Wang, R Ma, X Chen, TH Lin, YL Chen, S Wei, T Jin, ..., A Novel Broad Host Range Phage Infecting Alteromonas, Viruses 13 (6), 987, 2021
2021	TH Hsiao, YL Chen, M Meng, MR Chuang, M Horinouchi, T Hayashi, ..., Mechanistic and phylogenetic insights into actinobacteria‐mediated oestrogen biodegradation in urban estuarine sediments, Microbial Biotechnology 14 (3), 1212-1227, 2021
2021	STS Wei, YL Chen, YW Wu, TY Wu, YL Lai, PH Wang, W Ismail, TH Lee, ..., Integrated multi-omics investigations reveal the key role of synergistic microbial networks in removing plasticizer di-(2-ethylhexyl) phthalate from estuarine sediments, Msystems 6 (3), 10.1128/msystems. 00358-21, 2021
2020	PH Wang, YL Chen, STS Wei, K Wu, TH Lee, TY Wu, YR Chiang, Retroconversion of estrogens into androgens by bacteria via a cobalamin-mediated methylation, Proceedings of the National Academy of Sciences 117 (3), 1395-1403, 2020
2019	YL Chen, STS Wei, YR Chiang, Genome analysis of the steroid-degrading denitrifying Denitratisoma oestradiolicum DSM 16959 and Denitratisoma sp. strain DHT3, bioRxiv, 710707, 2019
2019	K Wu, TH Lee, YL Chen, YS Wang, PH Wang, CP Yu, KH Chu, YR Chiang, Metabolites involved in aerobic degradation of the A and B rings of estrogen, 2019
2018	YL Chen, HY Fu, TH Lee, CJ Shih, L Huang, YS Wang, W Ismail, ..., Estrogen degraders and estrogen degradation pathway identified in an activated sludge, Applied and Environmental Microbiology 84 (10), e00001-18, 2018
2017	CJ Shih, YL Chen, CH Wang, STS Wei, IT Lin, WA Ismail, YR Chiang, Biochemical mechanisms and microorganisms involved in anaerobic testosterone metabolism in estuarine sediments, Frontiers in Microbiology 8, 1520, 2017
2017	YL Chen, CP Yu, TH Lee, KS Goh, KH Chu, PH Wang, W Ismail, CJ Shih, ..., Biochemical mechanisms and catabolic enzymes involved in bacterial estrogen degradation pathways, Cell Chemical Biology 24 (6), 712-724. e7, 2017
2016	YL Chen, CH Wang, FC Yang, W Ismail, PH Wang, CJ Shih, YC Wu, ..., Identification of Comamonas testosteroni as an androgen degrader in sewage, scientific reports 6 (1), 35386, 2016
2016	FC Yang, YL Chen, SL Tang, CP Yu, PH Wang, W Ismail, CH Wang, ..., Integrated multi-omics analyses reveal the biochemical mechanisms and phylogenetic relevance of anaerobic androgen biodegradation in the environment, The ISME Journal 10 (8), 1967-1983, 2016
2015	SLT Ching-Hung Tseng, Pei-Wen Chiang, Hung-Chun Lai, Fuh-Kwo Shiah, Ting ..., Prokaryotic assemblages and metagenomes in pelagic zones of the South China Sea, BMC genomics 16 (1), 219, 2015
2013	CH Tseng, PW Chiang, FK Shiah, YL Chen, JR Liou, TC Hsu, ..., Microbial and viral metagenomes of a subtropical freshwater reservoir subject to climatic disturbances, The ISME journal 7 (12), 2374-2386, 2013
2011	Y Yamamoto, FK Shiah, YL Chen, Importance of large colony formation in bloom-forming cyanobacteria to dominate in eutrophic ponds, Annales de Limnologie-International Journal of Limnology 47 (2), 167-173, 2011
2010	YF Tseng, TC Hsu, YL Chen, SJ Kao, JT Wu, JC Lu, CC Lai, HY Kuo, .., Typhoon effects on DOC dynamics in a phosphate-limited reservoir, Aquatic Microbial Ecology 60 (3), 247-260, 2010

Department of Agricultural Chemistry, National Taiwan University